Version 0.2.9

CMakeLists.txt

@@ -1,6 +1,8 @@
 cmake_minimum_required(VERSION 3.14)
 
-project(libXISF VERSION 0.2.3 LANGUAGES CXX C)
+project(libXISF VERSION 0.2.9 LANGUAGES CXX C
+    HOMEPAGE_URL https://gitea.nouspiro.space/nou/libXISF
+    DESCRIPTION "LibXISF is C++ library that can read and write XISF files produced by PixInsight.")
 
 include(CMakeDependentOption)
 
@@ -16,7 +18,7 @@ cmake_dependent_option(USE_BUNDLED_LZ4 "Use bundled LZ4" ON "USE_BUNDLED_LIBS" O
 cmake_dependent_option(USE_BUNDLED_PUGIXML "Use bundled PugiXML" ON "USE_BUNDLED_LIBS" OFF)
 cmake_dependent_option(USE_BUNDLED_ZLIB "Use bundled Zlib" ON "USE_BUNDLED_LIBS" OFF)
 
-find_package(PkgConfig REQUIRED)
+find_package(PkgConfig)
 
 if(USE_BUNDLED_LZ4)
     list(APPEND THIRD_PARTY_SRC
@@ -64,6 +66,8 @@ add_library(XISF
   libXISF_global.h
   libxisf.cpp
   libxisf.h
+  streambuffer.cpp
+  streambuffer.h
   utils.cpp
   variant.cpp
   ${THIRD_PARTY_SRC}
@@ -73,19 +77,29 @@ if(USE_BUNDLED_LIBS)
     target_include_directories(XISF PRIVATE ${THIRD_PARTY_INCLUDE})
     if(NOT USE_BUNDLED_LZ4)
         target_link_libraries(XISF PUBLIC PkgConfig::LZ4)
+        list(APPEND PC_LIBS_REQUIRE lz4)
     endif(NOT USE_BUNDLED_LZ4)
     if(NOT USE_BUNDLED_PUGIXML)
         target_link_libraries(XISF PUBLIC PkgConfig::PUGIXML)
+        list(APPEND PC_LIBS_REQUIRE pugixml)
     endif(NOT USE_BUNDLED_PUGIXML)
     if(NOT USE_BUNDLED_ZLIB)
         target_link_libraries(XISF PUBLIC PkgConfig::ZLIB)
+        list(APPEND PC_LIBS_REQUIRE zlib)
     endif(NOT USE_BUNDLED_ZLIB)
 else(USE_BUNDLED_LIBS)
     target_link_libraries(XISF PUBLIC PkgConfig::LZ4 PkgConfig::PUGIXML PkgConfig::ZLIB)
+    list(APPEND PC_LIBS_REQUIRE lz4 pugixml zlib)
 endif(USE_BUNDLED_LIBS)
 
 set_target_properties(XISF PROPERTIES VERSION ${PROJECT_VERSION} SOVERSION ${PROJECT_VERSION_MAJOR})
 
+pkg_check_modules(ZSTD libzstd IMPORTED_TARGET)
+if(ZSTD_FOUND)
+    target_compile_definitions(XISF PRIVATE HAVE_ZSTD)
+    target_link_libraries(XISF PUBLIC PkgConfig::ZSTD)
+endif(ZSTD_FOUND)
+
 if(BUILD_SHARED_LIBS)
     target_compile_definitions(XISF PRIVATE LIBXISF_LIBRARY)
 else(BUILD_SHARED_LIBS)
@@ -97,8 +111,17 @@ set(XISF_PUBLIC_HEADERS libxisf.h libXISF_global.h)
 include(GNUInstallDirs)
 
 install(FILES ${XISF_PUBLIC_HEADERS} DESTINATION ${CMAKE_INSTALL_INCLUDEDIR})
+install(FILES ${CMAKE_CURRENT_BINARY_DIR}/libxisf.pc DESTINATION ${CMAKE_INSTALL_LIBDIR}/pkgconfig)
 install(TARGETS XISF LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR})
 
+list(JOIN PC_LIBS_REQUIRE ", " PC_REQUIRE_STR2)
+if(NOT PC_REQUIRE_STR2 STREQUAL "")
+    string(REPLACE "lz4" "liblz4" PC_REQUIRE_STR ${PC_REQUIRE_STR2})
+endif()
+list(TRANSFORM PC_LIBS_REQUIRE PREPEND "-l")
+list(JOIN PC_LIBS_REQUIRE " " PC_LIBS_STR)
+configure_file(libxisf.pc.in libxisf.pc @ONLY)
+
 #testing
 
 enable_testing()

libxisf.cpp

@@ -27,6 +27,10 @@
 #include <lz4hc.h>
 #include <pugixml.hpp>
 #include <zlib.h>
+#ifdef HAVE_ZSTD
+#include <zstd.h>
+#endif
+#include "streambuffer.h"
 
 namespace LibXISF
 {
@@ -141,6 +145,15 @@ void DataBlock::decompress(const ByteArray &input, const String &encoding)
         if(LZ4_decompress_safe(tmp.constData(), data.data(), tmp.size(), data.size()) < 0)
             throw Error("LZ4 decompression failed");
         break;
+    case ZSTD:
+#ifdef HAVE_ZSTD
+        data.resize(uncompressedSize);
+        if(ZSTD_isError(ZSTD_decompress(data.data(), data.size(), tmp.constData(), tmp.size())))
+            throw Error("ZSTD decompression failed");
+#else
+        throw Error("ZSTD support not compiled");
+#endif
+        break;
     }
 
     byteUnshuffle(data, byteShuffling);
@@ -191,7 +204,32 @@ void DataBlock::compress(int sampleFormatSize)
         data.resize(compSize);
         break;
     }
+    case ZSTD:
+    {
+#ifdef HAVE_ZSTD
+        size_t compSize = 0;
+        data.resize(ZSTD_compressBound(uncompressedSize));
+        compSize = ZSTD_compress(data.data(), data.size(), tmp.data(), tmp.size(), compressLevel < 0 ? ZSTD_CLEVEL_DEFAULT : compressLevel);
+        if(ZSTD_isError(compSize))
+            throw Error("ZSTD compression failed");
+
+        data.resize(compSize);
+#else
+        throw Error("ZSTD support not compiled");
+#endif
+        break;
     }
+    }
+}
+
+bool DataBlock::CompressionCodecSupported(CompressionCodec codec)
+{
+    (void)codec;
+#ifndef HAVE_ZSTD
+    if(codec == ZSTD)
+        return false;
+#endif
+    return true;
 }
 
 Property::Property(const String &_id, const char *_value) :
@@ -357,6 +395,16 @@ bool Image::addFITSKeywordAsProperty(const String &name, const String &value)
     return false;
 }
 
+const ByteArray &Image::iccProfile() const
+{
+    return _iccProfile;
+}
+
+void Image::setIccProfile(const ByteArray &iccProfile)
+{
+    _iccProfile = iccProfile;
+}
+
 void *Image::imageData()
 {
     return _dataBlock.data.size() ? _dataBlock.data.data() : nullptr;
@@ -520,6 +568,7 @@ public:
      *  @param readPixel when false it will read pixel data from file and imageData()
      *  will return nullptr */
     const Image& getImage(uint32_t n, bool readPixels = true);
+    const Image& getThumbnail();
 private:
     void readXISFHeader();
     void readSignature();
@@ -529,9 +578,12 @@ private:
     FITSKeyword parseFITSKeyword(const pugi::xml_node &node);
     ColorFilterArray parseCFA(const pugi::xml_node &node);
     Image parseImage(const pugi::xml_node &node);
+    void readAttachment(DataBlock &dataBlock);
 
     std::unique_ptr<std::istream> _io;
+    std::unique_ptr<StreamBuffer> _buffer;
     std::vector<Image> _images;
+    Image _thumbnail;
     std::vector<Property> _properties;
 };
 
@@ -546,8 +598,8 @@ void XISFReaderPrivate::open(const String &name)
 void XISFReaderPrivate::open(const ByteArray &data)
 {
     close();
-    std::string str((char*)data.data(), data.size());
+    _buffer = std::make_unique<StreamBuffer>(data);
-    _io = std::make_unique<std::istringstream>(str, std::ios_base::in | std::ios_base::binary);
+    _io = std::make_unique<std::istream>(_buffer.get());
     readSignature();
     readXISFHeader();
 }
@@ -563,6 +615,7 @@ void XISFReaderPrivate::open(std::istream *io)
 void XISFReaderPrivate::close()
 {
     _io.reset();
+    _buffer.reset();
     _images.clear();
     _properties.clear();
 }
@@ -579,13 +632,23 @@ const Image& XISFReaderPrivate::getImage(uint32_t n, bool readPixels)
 
     Image &img = _images[n];
     if(img._dataBlock.attachmentPos && readPixels)
+    {
+        readAttachment(img._dataBlock);
+    }
+    return img;
+}
+
+const Image &XISFReaderPrivate::getThumbnail()
+{
+    Image &img = _thumbnail;
+    if(_thumbnail._dataBlock.attachmentPos)
     {
         _io->seekg(img._dataBlock.attachmentPos);
         ByteArray data(img._dataBlock.attachmentSize);
         _io->read(data.data(), data.size());
         img._dataBlock.decompress(data);
     }
-    return img;
+    return _thumbnail;
 }
 
 void XISFReaderPrivate::readXISFHeader()
@@ -608,6 +671,9 @@ void XISFReaderPrivate::readXISFHeader()
 
         for(auto &property : root.children("Property"))
             _properties.push_back(parseProperty(property));
+
+        if(root.child("Thumbnail"))
+            _thumbnail = parseImage(root.child("Thumbnail"));
     }
     else throw Error("Unknown root XML element");
 }
@@ -634,6 +700,10 @@ void XISFReaderPrivate::parseCompression(const pugi::xml_node &node, DataBlock &
             dataBlock.codec = DataBlock::LZ4HC;
         else if(compression[0].find("lz4") == 0)
             dataBlock.codec = DataBlock::LZ4;
+#ifdef HAVE_ZSTD
+        else if(compression[0].find("zstd") == 0)
+            dataBlock.codec = DataBlock::ZSTD;
+#endif
         else
             throw Error("Unknown compression codec");
 
@@ -703,17 +773,10 @@ Property XISFReaderPrivate::parseProperty(const pugi::xml_node &node)
     {
         DataBlock dataBlock = parseDataBlock(node);
         if(dataBlock.attachmentPos)
-        {
+            readAttachment(dataBlock);
-            data.resize(dataBlock.attachmentSize);
+
-            _io->seekg(dataBlock.attachmentPos);
-            _io->read(data.data(), dataBlock.attachmentSize);
-            dataBlock.decompress(data);
-        }
-        else
-        {
         data = dataBlock.data;
     }
-    }
 
     deserializeVariant(node, property.value, data);
 
@@ -781,12 +844,26 @@ Image XISFReaderPrivate::parseImage(const pugi::xml_node &node)
     if(node.child("ICCProfile"))
     {
         DataBlock icc = parseDataBlock(node.child("ICCProfile"));
+        if(icc.attachmentPos)
+            readAttachment(icc);
+
         image._iccProfile = icc.data;
     }
 
+    if(node.child("Thumbnail") && std::strcmp(node.name(), "Thumbnail"))
+        _thumbnail = parseImage(node.child("Thumbnail"));
+
     return image;
 }
 
+void XISFReaderPrivate::readAttachment(DataBlock &dataBlock)
+{
+    ByteArray data(dataBlock.attachmentSize);
+    _io->seekg(dataBlock.attachmentPos);
+    _io->read(data.data(), dataBlock.attachmentSize);
+    dataBlock.decompress(data);
+}
+
 class  XISFWriterPrivate
 {
 public:
@@ -818,10 +895,10 @@ void XISFWriterPrivate::save(const String &name)
 
 void XISFWriterPrivate::save(ByteArray &data)
 {
-    std::ostringstream oss;
+    StreamBuffer buffer;
+    std::ostream oss(&buffer);
     save(oss);
-    std::string str = oss.str();
+    data = buffer.byteArray();
-    data = ByteArray(str.data(), str.size());
 }
 
 void XISFWriterPrivate::save(std::ostream &io)
@@ -952,6 +1029,12 @@ void XISFWriterPrivate::writeDataBlockAttributes(pugi::xml_node &image_node, con
         codec = "lz4";
     else if(dataBlock.codec == DataBlock::LZ4HC)
         codec = "lz4hc";
+    else if(dataBlock.codec == DataBlock::ZSTD)
+#ifdef HAVE_ZSTD
+        codec = "zstd";
+#else
+        throw Error("ZSTD support not compiled");
+#endif
 
     if(dataBlock.byteShuffling > 1)
         codec += "+sh";
@@ -1034,6 +1117,11 @@ const Image &XISFReader::getImage(uint32_t n, bool readPixels)
     return p->getImage(n, readPixels);
 }
 
+const Image &XISFReader::getThumbnail()
+{
+    return p->getThumbnail();
+}
+
 XISFWriter::XISFWriter()
 {
     p = new XISFWriterPrivate;
@@ -1108,6 +1196,10 @@ struct Init
                 compressionCodecOverride = DataBlock::LZ4HC;
             else if(compression.find("lz4") == 0)
                 compressionCodecOverride = DataBlock::LZ4;
+#ifdef HAVE_ZSTD
+            else if(compression.find("zstd") == 0)
+                compressionCodecOverride = DataBlock::ZSTD;
+#endif
 
             if(compression.find("+sh") != std::string::npos)
                 byteShuffleOverride = true;

libxisf.h

@@ -172,7 +172,8 @@ struct LIBXISF_EXPORT DataBlock
         None,
         Zlib,
         LZ4,
-        LZ4HC
+        LZ4HC,
+        ZSTD
     };
     bool embedded = false;
     uint32_t byteShuffling = 0;
@@ -184,6 +185,8 @@ struct LIBXISF_EXPORT DataBlock
     ByteArray data;
     void decompress(const ByteArray &input, const std::string &encoding = "");
     void compress(int sampleFormatSize);
+    /// ZSTD compression can be disabled at compile time
+    static bool CompressionCodecSupported(CompressionCodec codec);
 };
 
 struct LIBXISF_EXPORT Property
@@ -301,6 +304,8 @@ public:
      *  For example OBSERVER => Observer:Name, SITELAT => Observation:Location:Latitude
     */
     bool addFITSKeywordAsProperty(const String &name, const String &value);
+    const ByteArray& iccProfile() const;
+    void setIccProfile(const ByteArray &iccProfile);
 
     void* imageData();
     const void* imageData() const;
@@ -364,9 +369,14 @@ public:
     int imagesCount() const;
     /** Return reference to Image
      *  @param n index of image
-     *  @param readPixel when false it will read pixel data from file and imageData()
+     *  @param readPixel when false it will not read pixel data from file and imageData()
-     *  will return nullptr */
+     *  will return nullptr. Other properties like width, height, format etc will be returned correctly */
     const Image& getImage(uint32_t n, bool readPixels = true);
+    /**
+     * @brief getThumbnail
+     * @return image thumbnail
+     */
+    const Image& getThumbnail();
 private:
     XISFReaderPrivate *p;
 };

libxisf.pc.in

@@ -0,0 +1,12 @@
+prefix="@CMAKE_INSTALL_PREFIX@"
+exec_prefix="${prefix}"
+libdir="${exec_prefix}/@CMAKE_INSTALL_LIBDIR@"
+includedir="${prefix}/@CMAKE_INSTALL_INCLUDEDIR@"
+
+Name: @PROJECT_NAME@
+Description: @CMAKE_PROJECT_DESCRIPTION@
+URL: @CMAKE_PROJECT_HOMEPAGE_URL@
+Version: @PROJECT_VERSION@
+Requires.private: @PC_REQUIRE_STR@
+Cflags: -I"${includedir}"
+Libs: -L"${libdir}" -lXISF

streambuffer.cpp

@@ -0,0 +1,144 @@
+#include "streambuffer.h"
+
+namespace LibXISF
+{
+
+StreamBuffer::StreamBuffer()
+{
+    setg(nullptr, nullptr, nullptr);
+    setp(nullptr, nullptr);
+}
+
+StreamBuffer::StreamBuffer(const ByteArray &byteArray) :
+    _size(byteArray.size()),
+    _byteArray(byteArray)
+{
+    if(_byteArray.size())
+    {
+        char *ptr = _byteArray.data();
+        setg(ptr, ptr, ptr + _size);
+        setp(ptr, ptr + _size);
+    }
+    else
+    {
+        setg(nullptr, nullptr, nullptr);
+        setp(nullptr, nullptr);
+    }
+}
+
+ByteArray StreamBuffer::byteArray()
+{
+    return _byteArray;
+}
+
+StreamBuffer::pos_type StreamBuffer::seekoff(off_type off, std::ios_base::seekdir dir, std::ios_base::openmode mode)
+{
+    pos_type ret = pos_type(off_type(-1));
+    off_type newoffi = off;
+    off_type newoffo = off;
+    if(dir == std::ios_base::cur)
+    {
+        newoffi += gptr() - eback();
+        newoffo += pptr() - pbase();
+    }
+    else if(dir == std::ios_base::end)
+        newoffo = newoffi = _byteArray.size() - off;
+
+    char *ptr = _byteArray.data();
+    if(mode & std::ios_base::in && newoffi >= 0 && newoffi <= _size)
+    {
+        setg(ptr, ptr + newoffi, ptr + _size);
+        ret = pos_type(newoffi);
+    }
+
+    if(mode & std::ios_base::out && newoffo >= 0 && newoffo <= _size)
+    {
+        setp(ptr, ptr + _size);
+        pbump(newoffo);
+        ret = pos_type(newoffo);
+    }
+
+    return ret;
+}
+
+StreamBuffer::pos_type StreamBuffer::seekpos(pos_type pos, std::ios_base::openmode mode)
+{
+    pos_type ret = pos_type(off_type(-1));
+    off_type off = pos;
+
+    if(off >= 0 && off <= (off_type)_byteArray.size())
+    {
+        char *ptr = _byteArray.data();
+        if(mode & std::ios_base::in)
+            setg(ptr, ptr + pos, ptr + _size);
+
+        if(mode & std::ios_base::out)
+        {
+            setp(ptr, ptr + _size);
+            pbump(pos);
+        }
+
+        ret = pos;
+    }
+    return ret;
+}
+
+std::streamsize StreamBuffer::xsgetn(char_type *s, std::streamsize n)
+{
+    std::streamsize ret = 0;
+    std::streamsize len = egptr() - gptr();
+    if(len > 0)
+    {
+        std::streamsize c = std::min(n, len);
+        std::memcpy(s, gptr(), c);
+        gbump(c);
+        ret = c;
+    }
+    return ret;
+}
+
+StreamBuffer::int_type StreamBuffer::underflow()
+{
+    if(gptr() < egptr())
+        return traits_type::to_int_type(*gptr());
+    else
+        return traits_type::eof();
+}
+
+std::streamsize StreamBuffer::xsputn(const char_type *s, std::streamsize n)
+{
+    off_type len = epptr() - pptr();
+    if(len < n)
+    {
+        _size += n - len;
+        _byteArray.resize(_size);
+        update_ptrs();
+    }
+    std::memcpy(pptr(), s, n);
+    pbump(n);
+    return n;
+}
+
+StreamBuffer::int_type StreamBuffer::overflow(int_type c)
+{
+    if(traits_type::eq_int_type(traits_type::eof(), c))
+        return traits_type::eof();
+
+    _byteArray.append(c);
+    _size++;
+    pbump(1);
+    update_ptrs();
+    return c;
+}
+
+void StreamBuffer::update_ptrs()
+{
+    off_type ipos = gptr() - eback();
+    off_type opos = pptr() - pbase();
+    char *ptr = _byteArray.data();
+    setg(ptr, ptr + ipos, ptr + _size);
+    setp(ptr, ptr + _size);
+    pbump(opos);
+}
+
+}

streambuffer.h

@@ -0,0 +1,33 @@
+#ifndef STREAMBUFFER_H
+#define STREAMBUFFER_H
+
+#include <streambuf>
+#include "libxisf.h"
+
+namespace LibXISF
+{
+
+class StreamBuffer : public std::streambuf
+{
+public:
+    StreamBuffer();
+    StreamBuffer(const ByteArray &byteArray);
+    ByteArray byteArray();
+protected:
+    pos_type seekoff(off_type off, std::ios_base::seekdir dir, std::ios_base::openmode mode = std::ios_base::in | std::ios_base::out) override;
+    pos_type seekpos(pos_type pos, std::ios_base::openmode mode = std::ios_base::in | std::ios_base::out) override;
+
+    std::streamsize xsgetn(char_type *s, std::streamsize n) override;
+    int_type underflow() override;
+
+    std::streamsize xsputn(const char_type *s, std::streamsize n) override;
+    int_type overflow(int_type c = traits_type::eof()) override;
+private:
+    void update_ptrs();
+    off_type _size = 0;
+    ByteArray _byteArray;
+};
+
+}
+
+#endif // STREAMBUFFER_H

test/benchmark.cpp

@@ -78,6 +78,17 @@ void benchmarkType(float avg, float stdDev)
         std::cout << "LZ4HC compression   \tElapsed time: " << timer.elapsed() << " " << "ms\tSpeed: "
                   << size/1024.0/1.024/timer.elapsed() << "MiB/s\tRatio: " << baseSize/xisfImage.size() << std::endl;
     }
+    if(DataBlock::CompressionCodecSupported(DataBlock::ZSTD))
+    {
+        image.setCompression(DataBlock::ZSTD);
+        timer.start();
+        XISFWriter writer;
+        writer.writeImage(image);
+        ByteArray xisfImage;
+        writer.save(xisfImage);
+        std::cout << "ZSTD compression   \tElapsed time: " << timer.elapsed() << " " << "ms\tSpeed: "
+                  << size/1024.0/1.024/timer.elapsed() << "MiB/s\tRatio: " << baseSize/xisfImage.size() << std::endl;
+    }
     image.setByteshuffling(true);
     {
         image.setCompression(DataBlock::Zlib);
@@ -109,6 +120,17 @@ void benchmarkType(float avg, float stdDev)
         std::cout << "LZ4HC compression SH\tElapsed time: " << timer.elapsed() << " " << "ms\tSpeed: "
                   << size/1024.0/1.024/timer.elapsed() << "MiB/s\tRatio: " << baseSize/xisfImage.size() << std::endl;
     }
+    if(DataBlock::CompressionCodecSupported(DataBlock::ZSTD))
+    {
+        image.setCompression(DataBlock::ZSTD);
+        timer.start();
+        XISFWriter writer;
+        writer.writeImage(image);
+        ByteArray xisfImage;
+        writer.save(xisfImage);
+        std::cout << "ZSTD compression SH\tElapsed time: " << timer.elapsed() << " " << "ms\tSpeed: "
+                  << size/1024.0/1.024/timer.elapsed() << "MiB/s\tRatio: " << baseSize/xisfImage.size() << std::endl;
+    }
 }
 
 void benchmark()