30 Commits

Author SHA1 Message Date
nou 922d4b73c9 Make compression level 0-100 2024-06-05 22:26:06 +02:00
nou 263b380dbf Add missing license text in strembuffer files 2024-05-03 14:51:26 +02:00
nou 554bb9a7f6 Fix typo u_int32_t to uint32_t 2024-05-03 14:50:59 +02:00
nou 24a1b0ecc4 Add new XISFModify class to edit FITSKeywords 2024-05-02 23:22:46 +02:00
nou 87d65a31fc Release 0.2.12 2024-03-23 09:21:33 +01:00
nou f704b9f041 Fix wrong bracket position 2024-03-21 18:12:25 +01:00
nou c1e986080c Don't use replace to update attachement position 2024-03-21 16:52:25 +01:00
nou 4db1d86530 Add support for subblocks to handle +2GiB compressed images 2024-03-17 14:40:54 +01:00
nou 899fe98233 Fix bug with writing ICCProfile 2024-03-17 14:14:03 +01:00
nou 67887bd4c8 Workaround for windows where it can't read more than 2 GiB 2024-03-14 22:34:16 +01:00
nou e3ba8eedd8 Use std::stoull 2024-03-12 23:03:54 +01:00
nou bf690339b4 Workaround for gcc 10 2024-02-08 22:51:08 +01:00
nou 033a34e248 Add F32Matrix and F64Matrix into toString 2024-01-22 21:23:46 +01:00
nou cf9c903a90 Update version in CMakeLists.txt 2024-01-20 08:02:10 +01:00
nou aa356443d3 Convert aperture and focal length from mm to meters. 2024-01-05 16:15:30 +01:00
nou 16676540b4 Fix not loading String properties 2024-01-05 16:14:29 +01:00
nou bae3edd12a Resolve some erros for MSVC 2023-12-20 15:28:43 +01:00
nou c848ba75ff Fix typo in README 2023-12-02 14:35:01 +01:00
nou 8a1f305cc7 Fix incorrect header size 2023-10-16 19:17:04 +02:00
nou 8e05a58610 Version 0.2.9 2023-08-13 19:13:39 +02:00
nou 0b0c865df0 Support for ZSTD 2023-07-03 17:31:29 +02:00
nou a675e97e0b Release 0.2.8 2023-06-13 12:25:13 +02:00
nou 6028354c61 Remove linking against zstd 2023-06-12 23:41:48 +02:00
nou 467af80cb3 Fix reading ICCprofile 2023-06-05 12:21:27 +02:00
nou 76ee3f361c Release 0.2.6 2023-06-02 08:50:37 +02:00
nou cde2fc9a17 Fix "string sub-command REPLACE requires at least four arguments" 2023-05-31 14:56:26 +02:00
nou 0ddff094ef Fix generating pkgconfig file 2023-05-29 23:16:53 +02:00
nou 5dcc383090 Fix generating pkgconfig file 2023-05-29 22:59:24 +02:00
nou 0893bfa048 Add method to for ICC profile 2023-05-24 16:28:11 +02:00
nou a536a271ab Add StreamBuffer to optimize save/load from memory 2023-05-21 19:33:36 +02:00
10 changed files with 936 additions and 77 deletions
+15 -1
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@@ -1,6 +1,6 @@
cmake_minimum_required(VERSION 3.14) cmake_minimum_required(VERSION 3.14)
project(libXISF VERSION 0.2.4 LANGUAGES CXX C project(libXISF VERSION 0.2.12 LANGUAGES CXX C
HOMEPAGE_URL https://gitea.nouspiro.space/nou/libXISF HOMEPAGE_URL https://gitea.nouspiro.space/nou/libXISF
DESCRIPTION "LibXISF is C++ library that can read and write XISF files produced by PixInsight.") DESCRIPTION "LibXISF is C++ library that can read and write XISF files produced by PixInsight.")
@@ -66,6 +66,8 @@ add_library(XISF
libXISF_global.h libXISF_global.h
libxisf.cpp libxisf.cpp
libxisf.h libxisf.h
streambuffer.cpp
streambuffer.h
utils.cpp utils.cpp
variant.cpp variant.cpp
${THIRD_PARTY_SRC} ${THIRD_PARTY_SRC}
@@ -92,6 +94,12 @@ endif(USE_BUNDLED_LIBS)
set_target_properties(XISF PROPERTIES VERSION ${PROJECT_VERSION} SOVERSION ${PROJECT_VERSION_MAJOR}) set_target_properties(XISF PROPERTIES VERSION ${PROJECT_VERSION} SOVERSION ${PROJECT_VERSION_MAJOR})
pkg_check_modules(ZSTD libzstd IMPORTED_TARGET)
if(ZSTD_FOUND)
target_compile_definitions(XISF PRIVATE HAVE_ZSTD)
target_link_libraries(XISF PUBLIC PkgConfig::ZSTD)
endif(ZSTD_FOUND)
if(BUILD_SHARED_LIBS) if(BUILD_SHARED_LIBS)
target_compile_definitions(XISF PRIVATE LIBXISF_LIBRARY) target_compile_definitions(XISF PRIVATE LIBXISF_LIBRARY)
else(BUILD_SHARED_LIBS) else(BUILD_SHARED_LIBS)
@@ -106,6 +114,12 @@ install(FILES ${XISF_PUBLIC_HEADERS} DESTINATION ${CMAKE_INSTALL_INCLUDEDIR})
install(FILES ${CMAKE_CURRENT_BINARY_DIR}/libxisf.pc DESTINATION ${CMAKE_INSTALL_LIBDIR}/pkgconfig) install(FILES ${CMAKE_CURRENT_BINARY_DIR}/libxisf.pc DESTINATION ${CMAKE_INSTALL_LIBDIR}/pkgconfig)
install(TARGETS XISF LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR}) install(TARGETS XISF LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR})
list(JOIN PC_LIBS_REQUIRE ", " PC_REQUIRE_STR2)
if(NOT PC_REQUIRE_STR2 STREQUAL "")
string(REPLACE "lz4" "liblz4" PC_REQUIRE_STR ${PC_REQUIRE_STR2})
endif()
list(TRANSFORM PC_LIBS_REQUIRE PREPEND "-l")
list(JOIN PC_LIBS_REQUIRE " " PC_LIBS_STR)
configure_file(libxisf.pc.in libxisf.pc @ONLY) configure_file(libxisf.pc.in libxisf.pc @ONLY)
#testing #testing
+1 -1
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@@ -9,7 +9,7 @@ To compile simply run these commands
``` ```
cmake -B build -S . cmake -B build -S .
cmake --build build --parallel cmake --build build --parallel
cmake --install . cmake --install build
``` ```
By default it use bundled libraries. If you wish to use external libraries you will may add By default it use bundled libraries. If you wish to use external libraries you will may add
+591 -60
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@@ -23,10 +23,15 @@
#include <iostream> #include <iostream>
#include <sstream> #include <sstream>
#include <cstdlib> #include <cstdlib>
#include <cmath>
#include <lz4.h> #include <lz4.h>
#include <lz4hc.h> #include <lz4hc.h>
#include <pugixml.hpp> #include <pugixml.hpp>
#include <zlib.h> #include <zlib.h>
#ifdef HAVE_ZSTD
#include <zstd.h>
#endif
#include "streambuffer.h"
namespace LibXISF namespace LibXISF
{ {
@@ -45,6 +50,7 @@ static std::unordered_map<Image::ColorSpace, String> colorSpaceToString;
static DataBlock::CompressionCodec compressionCodecOverride = DataBlock::None; static DataBlock::CompressionCodec compressionCodecOverride = DataBlock::None;
static bool byteShuffleOverride = false; static bool byteShuffleOverride = false;
static int compressionLevelOverride = -1; static int compressionLevelOverride = -1;
const size_t GiB = 1073741824;
static const std::unordered_map<String, std::pair<String, Variant::Type>> fitsNameToPropertyIdTypeConvert = { static const std::unordered_map<String, std::pair<String, Variant::Type>> fitsNameToPropertyIdTypeConvert = {
{"OBSERVER", {"Observer:Name", Variant::Type::String}}, {"OBSERVER", {"Observer:Name", Variant::Type::String}},
@@ -82,12 +88,12 @@ static void byteShuffle(ByteArray &data, int itemSize)
{ {
ByteArray &input = data; ByteArray &input = data;
ByteArray output(input.size()); ByteArray output(input.size());
int num = input.size() / itemSize; size_t num = input.size() / itemSize;
char *s = output.data(); char *s = output.data();
for(int i=0; i<itemSize; i++) for(int i=0; i<itemSize; i++)
{ {
const char *u = input.constData() + i; const char *u = input.constData() + i;
for(int o=0; o<num; o++, s++, u += itemSize) for(size_t o=0; o<num; o++, s++, u += itemSize)
*s = *u; *s = *u;
} }
memcpy(s, input.constData() + num * itemSize, input.size() % itemSize); memcpy(s, input.constData() + num * itemSize, input.size() % itemSize);
@@ -101,12 +107,12 @@ static void byteUnshuffle(ByteArray &data, int itemSize)
{ {
ByteArray &input = data; ByteArray &input = data;
ByteArray output(input.size()); ByteArray output(input.size());
int num = input.size() / itemSize; size_t num = input.size() / itemSize;
const char *s = input.constData(); const char *s = input.constData();
for(int i=0; i<itemSize; i++) for(int i=0; i<itemSize; i++)
{ {
char *u = output.data() + i; char *u = output.data() + i;
for(int o=0; o<num; o++, s++, u += itemSize) for(size_t o=0; o<num; o++, s++, u += itemSize)
*u = *s; *u = *s;
} }
memcpy(output.data() + num * itemSize, s, input.size() % itemSize); memcpy(output.data() + num * itemSize, s, input.size() % itemSize);
@@ -123,6 +129,9 @@ void DataBlock::decompress(const ByteArray &input, const String &encoding)
else if(encoding == "base16") else if(encoding == "base16")
tmp.decodeHex(); tmp.decodeHex();
if(subblocks.size() == 0)
subblocks.push_back({tmp.size(), uncompressedSize});
switch(codec) switch(codec)
{ {
case None: case None:
@@ -131,17 +140,54 @@ void DataBlock::decompress(const ByteArray &input, const String &encoding)
case Zlib: case Zlib:
{ {
data.resize(uncompressedSize); data.resize(uncompressedSize);
uLongf size = uncompressedSize; const char *srcPtr = tmp.constData();
::uncompress((Bytef*)data.data(), &size, (Bytef*)tmp.data(), tmp.size()); char *dstPtr = data.data();
for(auto &block : subblocks)
{
uLongf size = block.second;
::uncompress((Bytef*)dstPtr, &size, (const Bytef*)srcPtr, block.first);
srcPtr += block.first;
dstPtr += block.second;
}
break; break;
} }
case LZ4: case LZ4:
case LZ4HC: case LZ4HC:
{
data.resize(uncompressedSize); data.resize(uncompressedSize);
if(LZ4_decompress_safe(tmp.constData(), data.data(), tmp.size(), data.size()) < 0) const char *srcPtr = tmp.constData();
char *dstPtr = data.data();
for(auto &block : subblocks)
{
if(LZ4_decompress_safe(srcPtr, dstPtr, block.first, block.second) < 0)
throw Error("LZ4 decompression failed"); throw Error("LZ4 decompression failed");
srcPtr += block.first;
dstPtr += block.second;
}
break; break;
} }
case ZSTD:
#ifdef HAVE_ZSTD
{
data.resize(uncompressedSize);
const char *srcPtr = tmp.constData();
char *dstPtr = data.data();
for(auto &block : subblocks)
{
if(ZSTD_isError(ZSTD_decompress(dstPtr, block.second, srcPtr, block.first)))
throw Error("ZSTD decompression failed");
srcPtr += block.first;
dstPtr += block.second;
}
}
#else
throw Error("ZSTD support not compiled");
#endif
break;
}
subblocks.clear();
byteUnshuffle(data, byteShuffling); byteUnshuffle(data, byteShuffling);
attachmentPos = 0; attachmentPos = 0;
@@ -168,31 +214,78 @@ void DataBlock::compress(int sampleFormatSize)
break; break;
case Zlib: case Zlib:
{ {
data.resize(compressBound(uncompressedSize)); int64_t size = tmp.size();
uLongf compressedSize = data.size(); int64_t compSize = 0;
if(::compress2((Bytef*)data.data(), &compressedSize, (Bytef*)tmp.data(), tmp.size(), compressLevel) != Z_OK) int64_t inPtr = 0;
while(inPtr < size)
{
int64_t inSize = UINT32_MAX < size - inPtr ? UINT32_MAX : size - inPtr;
data.resize(compSize + compressBound(inSize));
uLongf outSize = data.size() - compSize;
if(::compress2((Bytef*)data.data() + compSize, &outSize, (const Bytef*)tmp.constData() + inPtr, inSize, compressLevel) != Z_OK)
throw Error("Zlib compression failed"); throw Error("Zlib compression failed");
data.resize(compressedSize);
compSize += outSize;
inPtr += inSize;
subblocks.push_back({outSize, inSize});
}
data.resize(compSize);
break; break;
} }
case LZ4: case LZ4:
case LZ4HC: case LZ4HC:
{ {
int compSize = 0; int64_t size = tmp.size();
data.resize(LZ4_compressBound(tmp.size())); int64_t compSize = 0;
if(codec == LZ4) int64_t inPtr = 0;
compSize = LZ4_compress_default(tmp.constData(), data.data(), tmp.size(), data.size()); while(inPtr < size)
else {
compSize = LZ4_compress_HC(tmp.constData(), data.data(), tmp.size(), data.size(), compressLevel < 0 ? LZ4HC_CLEVEL_DEFAULT : compressLevel); int64_t inSize = LZ4_MAX_INPUT_SIZE < size - inPtr ? LZ4_MAX_INPUT_SIZE : size - inPtr;
data.resize(compSize + LZ4_compressBound(inSize));
int outSize = 0;
if(compSize <= 0) if(codec == LZ4)
outSize = LZ4_compress_default(tmp.constData() + inPtr, data.data() + compSize, inSize, data.size() - compSize);
else
outSize = LZ4_compress_HC(tmp.constData() + inPtr, data.data() + compSize, inSize, data.size() - compSize, compressLevel < 0 ? LZ4HC_CLEVEL_DEFAULT : compressLevel);
if(outSize <= 0)
throw Error("LZ4 compression failed"); throw Error("LZ4 compression failed");
compSize += outSize;
inPtr += inSize;
subblocks.push_back({outSize, inSize});
}
data.resize(compSize); data.resize(compSize);
break; break;
} }
case ZSTD:
{
#ifdef HAVE_ZSTD
size_t compSize = 0;
data.resize(ZSTD_compressBound(uncompressedSize));
compSize = ZSTD_compress(data.data(), data.size(), tmp.data(), tmp.size(), compressLevel < 0 ? ZSTD_CLEVEL_DEFAULT : compressLevel);
if(ZSTD_isError(compSize))
throw Error("ZSTD compression failed");
data.resize(compSize);
#else
throw Error("ZSTD support not compiled");
#endif
break;
} }
} }
}
bool DataBlock::CompressionCodecSupported(CompressionCodec codec)
{
(void)codec;
#ifndef HAVE_ZSTD
if(codec == ZSTD)
return false;
#endif
return true;
}
Property::Property(const String &_id, const char *_value) : Property::Property(const String &_id, const char *_value) :
id(_id), id(_id),
@@ -351,12 +444,26 @@ bool Image::addFITSKeywordAsProperty(const String &name, const String &value)
{ {
auto &c = fitsNameToPropertyIdTypeConvert.at(name); auto &c = fitsNameToPropertyIdTypeConvert.at(name);
Property prop(c.first, variantFromString(c.second, value)); Property prop(c.first, variantFromString(c.second, value));
if(name == "APTDIA" || name == "FOCALLEN")
prop.value.value<LibXISF::Float32>() /= 1000.0f;
updateProperty(prop); updateProperty(prop);
return true; return true;
} }
return false; return false;
} }
const ByteArray &Image::iccProfile() const
{
return _iccProfile;
}
void Image::setIccProfile(const ByteArray &iccProfile)
{
_iccProfile = iccProfile;
}
void *Image::imageData() void *Image::imageData()
{ {
return _dataBlock.data.size() ? _dataBlock.data.data() : nullptr; return _dataBlock.data.size() ? _dataBlock.data.data() : nullptr;
@@ -380,7 +487,38 @@ DataBlock::CompressionCodec Image::compression() const
void Image::setCompression(DataBlock::CompressionCodec compression, int level) void Image::setCompression(DataBlock::CompressionCodec compression, int level)
{ {
_dataBlock.codec = compression; _dataBlock.codec = compression;
_dataBlock.compressLevel = level; _dataBlock.compressLevel = -1;
level = std::min(std::max(level, -1), 100);
auto percentToRange = [](int val, int min, int max)
{
double slope = (max - min) / 100.0;
return std::round(min + slope * val);
};
if(level >= 0)
{
switch(compression)
{
case DataBlock::CompressionCodec::Zlib:
_dataBlock.compressLevel = percentToRange(level, Z_BEST_SPEED, Z_BEST_COMPRESSION);
break;
case DataBlock::CompressionCodec::LZ4:
case DataBlock::CompressionCodec::LZ4HC:
_dataBlock.compressLevel = percentToRange(level, 1, LZ4HC_CLEVEL_MAX);
break;
case DataBlock::CompressionCodec::ZSTD:
#ifdef HAVE_ZSTD
_dataBlock.compressLevel = percentToRange(level, ZSTD_minCLevel(), ZSTD_maxCLevel());
#endif
break;
default:
//nothing
break;
}
}
} }
bool Image::byteShuffling() const bool Image::byteShuffling() const
@@ -530,8 +668,10 @@ private:
FITSKeyword parseFITSKeyword(const pugi::xml_node &node); FITSKeyword parseFITSKeyword(const pugi::xml_node &node);
ColorFilterArray parseCFA(const pugi::xml_node &node); ColorFilterArray parseCFA(const pugi::xml_node &node);
Image parseImage(const pugi::xml_node &node); Image parseImage(const pugi::xml_node &node);
void readAttachment(DataBlock &dataBlock);
std::unique_ptr<std::istream> _io; std::unique_ptr<std::istream> _io;
std::unique_ptr<StreamBuffer> _buffer;
std::vector<Image> _images; std::vector<Image> _images;
Image _thumbnail; Image _thumbnail;
std::vector<Property> _properties; std::vector<Property> _properties;
@@ -548,8 +688,8 @@ void XISFReaderPrivate::open(const String &name)
void XISFReaderPrivate::open(const ByteArray &data) void XISFReaderPrivate::open(const ByteArray &data)
{ {
close(); close();
std::string str((char*)data.data(), data.size()); _buffer = std::make_unique<StreamBuffer>(data);
_io = std::make_unique<std::istringstream>(str, std::ios_base::in | std::ios_base::binary); _io = std::make_unique<std::istream>(_buffer.get());
readSignature(); readSignature();
readXISFHeader(); readXISFHeader();
} }
@@ -565,6 +705,7 @@ void XISFReaderPrivate::open(std::istream *io)
void XISFReaderPrivate::close() void XISFReaderPrivate::close()
{ {
_io.reset(); _io.reset();
_buffer.reset();
_images.clear(); _images.clear();
_properties.clear(); _properties.clear();
} }
@@ -582,10 +723,7 @@ const Image& XISFReaderPrivate::getImage(uint32_t n, bool readPixels)
Image &img = _images[n]; Image &img = _images[n];
if(img._dataBlock.attachmentPos && readPixels) if(img._dataBlock.attachmentPos && readPixels)
{ {
_io->seekg(img._dataBlock.attachmentPos); readAttachment(img._dataBlock);
ByteArray data(img._dataBlock.attachmentSize);
_io->read(data.data(), data.size());
img._dataBlock.decompress(data);
} }
return img; return img;
} }
@@ -652,10 +790,14 @@ void XISFReaderPrivate::parseCompression(const pugi::xml_node &node, DataBlock &
dataBlock.codec = DataBlock::LZ4HC; dataBlock.codec = DataBlock::LZ4HC;
else if(compression[0].find("lz4") == 0) else if(compression[0].find("lz4") == 0)
dataBlock.codec = DataBlock::LZ4; dataBlock.codec = DataBlock::LZ4;
#ifdef HAVE_ZSTD
else if(compression[0].find("zstd") == 0)
dataBlock.codec = DataBlock::ZSTD;
#endif
else else
throw Error("Unknown compression codec"); throw Error("Unknown compression codec");
dataBlock.uncompressedSize = std::stoul(compression[1]); dataBlock.uncompressedSize = std::stoull(compression[1]);
if(compression[0].find("+sh") != std::string::npos) if(compression[0].find("+sh") != std::string::npos)
{ {
@@ -664,6 +806,18 @@ void XISFReaderPrivate::parseCompression(const pugi::xml_node &node, DataBlock &
else else
throw Error("Missing byte shuffling size"); throw Error("Missing byte shuffling size");
} }
if(node.attribute("subblocks"))
{
std::vector<std::string> subblocks = splitString(node.attribute("subblocks").as_string(), ':');
for(auto &block : subblocks)
{
size_t pos = 0;
size_t comp = std::stoull(block, &pos);
size_t deco = std::stoull(block.substr(pos+1));
dataBlock.subblocks.push_back({comp, deco});
}
}
} }
} }
@@ -685,8 +839,8 @@ DataBlock XISFReaderPrivate::parseDataBlock(const pugi::xml_node &node)
} }
else if(location.size() >= 3 && location[0] == "attachment") else if(location.size() >= 3 && location[0] == "attachment")
{ {
dataBlock.attachmentPos = std::stoul(location[1]); dataBlock.attachmentPos = std::stoull(location[1]);
dataBlock.attachmentSize = std::stoul(location[2]); dataBlock.attachmentSize = std::stoull(location[2]);
} }
else else
{ {
@@ -721,17 +875,10 @@ Property XISFReaderPrivate::parseProperty(const pugi::xml_node &node)
{ {
DataBlock dataBlock = parseDataBlock(node); DataBlock dataBlock = parseDataBlock(node);
if(dataBlock.attachmentPos) if(dataBlock.attachmentPos)
{ readAttachment(dataBlock);
data.resize(dataBlock.attachmentSize);
_io->seekg(dataBlock.attachmentPos);
_io->read(data.data(), dataBlock.attachmentSize);
dataBlock.decompress(data);
}
else
{
data = dataBlock.data; data = dataBlock.data;
} }
}
deserializeVariant(node, property.value, data); deserializeVariant(node, property.value, data);
@@ -769,9 +916,9 @@ Image XISFReaderPrivate::parseImage(const pugi::xml_node &node)
std::vector<std::string> geometry = splitString(node.attribute("geometry").as_string(), ':'); std::vector<std::string> geometry = splitString(node.attribute("geometry").as_string(), ':');
if(geometry.size() != 3)throw Error("We support only 2D images"); if(geometry.size() != 3)throw Error("We support only 2D images");
image._width = std::stoul(geometry[0]); image._width = std::stoull(geometry[0]);
image._height = std::stoul(geometry[1]); image._height = std::stoull(geometry[1]);
image._channelCount = std::stoul(geometry[2]); image._channelCount = std::stoull(geometry[2]);
if(!image._width || !image._height || !image._channelCount)throw Error("Invalid image geometry"); if(!image._width || !image._height || !image._channelCount)throw Error("Invalid image geometry");
std::vector<std::string> bounds = splitString(node.attribute("bounds").as_string(), ':'); std::vector<std::string> bounds = splitString(node.attribute("bounds").as_string(), ':');
@@ -799,6 +946,9 @@ Image XISFReaderPrivate::parseImage(const pugi::xml_node &node)
if(node.child("ICCProfile")) if(node.child("ICCProfile"))
{ {
DataBlock icc = parseDataBlock(node.child("ICCProfile")); DataBlock icc = parseDataBlock(node.child("ICCProfile"));
if(icc.attachmentPos)
readAttachment(icc);
image._iccProfile = icc.data; image._iccProfile = icc.data;
} }
@@ -808,6 +958,22 @@ Image XISFReaderPrivate::parseImage(const pugi::xml_node &node)
return image; return image;
} }
void XISFReaderPrivate::readAttachment(DataBlock &dataBlock)
{
ByteArray data(dataBlock.attachmentSize);
_io->seekg(dataBlock.attachmentPos);
size_t size = dataBlock.attachmentSize;
char *ptr = data.data();
while(size > 0)
{
size_t s = std::min(size, GiB);
_io->read(ptr, s);
size -= s;
ptr += s;
}
dataBlock.decompress(data);
}
class XISFWriterPrivate class XISFWriterPrivate
{ {
public: public:
@@ -815,13 +981,14 @@ public:
void save(ByteArray &data); void save(ByteArray &data);
void save(std::ostream &io); void save(std::ostream &io);
void writeImage(const Image &image); void writeImage(const Image &image);
static void writeFITSKeyword(pugi::xml_node &node, const FITSKeyword &keyword);
private: private:
void writeHeader(); void writeHeader();
void writeImageElement(pugi::xml_node &node, const Image &image); void writeImageElement(pugi::xml_node &node, const Image &image);
void writeDataBlockAttributes(pugi::xml_node &image_node, const DataBlock &dataBlock); void writeDataBlockAttributes(pugi::xml_node &image_node, const DataBlock &dataBlock);
void writePropertyElement(pugi::xml_node &node, const Property &property); void writePropertyElement(pugi::xml_node &node, const Property &property);
void writeFITSKeyword(pugi::xml_node &node, const FITSKeyword &keyword);
void writeMetadata(pugi::xml_node &node); void writeMetadata(pugi::xml_node &node);
void updateImageAttachmentPos(pugi::xml_node &root, size_t offset);
ByteArray _xisfHeader; ByteArray _xisfHeader;
ByteArray _attachmentsData; ByteArray _attachmentsData;
std::vector<Image> _images; std::vector<Image> _images;
@@ -839,10 +1006,10 @@ void XISFWriterPrivate::save(const String &name)
void XISFWriterPrivate::save(ByteArray &data) void XISFWriterPrivate::save(ByteArray &data)
{ {
std::ostringstream oss; StreamBuffer buffer;
std::ostream oss(&buffer);
save(oss); save(oss);
std::string str = oss.str(); data = buffer.byteArray();
data = ByteArray(str.data(), str.size());
} }
void XISFWriterPrivate::save(std::ostream &io) void XISFWriterPrivate::save(std::ostream &io)
@@ -853,7 +1020,15 @@ void XISFWriterPrivate::save(std::ostream &io)
for(auto &image : _images) for(auto &image : _images)
{ {
io.write(image._dataBlock.data.constData(), image._dataBlock.data.size()); const char *ptr = image._dataBlock.data.constData();
size_t size = image._dataBlock.data.size();
while(size > 0)
{
size_t s = std::min(size, GiB);
io.write(ptr, s);
ptr += s;
size -= s;
}
} }
} }
@@ -884,25 +1059,26 @@ void XISFWriterPrivate::writeHeader()
writeMetadata(root); writeMetadata(root);
uint32_t size = 0;
std::string header;
while(true)
{
std::stringstream xml; std::stringstream xml;
xml.write(signature, sizeof(signature)); xml.write(signature, sizeof(signature));
doc.save(xml, "", pugi::format_raw); doc.save(xml, "", pugi::format_raw);
header = xml.str();
std::string header = xml.str(); if(size != header.size())
uint32_t size = header.size();
uint32_t offset = 0;
std::string replace = "attachment:2147483648";
for(auto &image : _images)
{ {
std::string blockPos = std::string("attachment:") + std::to_string(size + offset); size = header.size();
size_t pos = header.find(replace, 32); updateImageAttachmentPos(root, size);
header.replace(pos, replace.size(), blockPos); }
offset += image._dataBlock.data.size(); else
{
break;
}
} }
uint32_t headerSize = size - sizeof(signature); uint32_t headerSize = header.size() - sizeof(signature);
header.resize(size, 0);
header.replace(8, sizeof(uint32_t), (const char*)&headerSize, sizeof(uint32_t)); header.replace(8, sizeof(uint32_t), (const char*)&headerSize, sizeof(uint32_t));
_xisfHeader = ByteArray(header.c_str(), header.size()); _xisfHeader = ByteArray(header.c_str(), header.size());
@@ -942,7 +1118,8 @@ void XISFWriterPrivate::writeImageElement(pugi::xml_node &node, const Image &ima
if(image._iccProfile.size()) if(image._iccProfile.size())
{ {
ByteArray base64 = image._iccProfile; ByteArray base64 = image._iccProfile;
base64.decodeBase64(); base64.encodeBase64();
base64.append('\0');
pugi::xml_node icc_node = image_node.append_child("ICCProfile"); pugi::xml_node icc_node = image_node.append_child("ICCProfile");
icc_node.append_attribute("location").set_value("inline:base64"); icc_node.append_attribute("location").set_value("inline:base64");
icc_node.append_child(pugi::node_pcdata).set_value(base64.data()); icc_node.append_child(pugi::node_pcdata).set_value(base64.data());
@@ -961,7 +1138,10 @@ void XISFWriterPrivate::writeDataBlockAttributes(pugi::xml_node &image_node, con
} }
else else
{ {
std::string attachment = "attachment:2147483648:" + std::to_string(dataBlock.data.size()); std::string attachment = "attachment:";
if(dataBlock.attachmentPos == 0) attachment += "99999";
else attachment += std::to_string(dataBlock.attachmentPos);
attachment += ":" + std::to_string(dataBlock.data.size());
image_node.append_attribute("location").set_value(attachment.c_str()); image_node.append_attribute("location").set_value(attachment.c_str());
} }
@@ -973,6 +1153,12 @@ void XISFWriterPrivate::writeDataBlockAttributes(pugi::xml_node &image_node, con
codec = "lz4"; codec = "lz4";
else if(dataBlock.codec == DataBlock::LZ4HC) else if(dataBlock.codec == DataBlock::LZ4HC)
codec = "lz4hc"; codec = "lz4hc";
else if(dataBlock.codec == DataBlock::ZSTD)
#ifdef HAVE_ZSTD
codec = "zstd";
#else
throw Error("ZSTD support not compiled");
#endif
if(dataBlock.byteShuffling > 1) if(dataBlock.byteShuffling > 1)
codec += "+sh"; codec += "+sh";
@@ -985,6 +1171,19 @@ void XISFWriterPrivate::writeDataBlockAttributes(pugi::xml_node &image_node, con
image_node.append_attribute("compression").set_value(codec.c_str()); image_node.append_attribute("compression").set_value(codec.c_str());
} }
if(!dataBlock.subblocks.empty())
{
std::string subblocks;
for(auto i = dataBlock.subblocks.begin(); i != dataBlock.subblocks.end(); i++)
{
if(i != dataBlock.subblocks.begin())
subblocks += ":";
subblocks += std::to_string(i->first) + "," + std::to_string(i->second);
}
image_node.append_attribute("subblocks").set_value(subblocks.c_str());
}
} }
void XISFWriterPrivate::writePropertyElement(pugi::xml_node &node, const Property &property) void XISFWriterPrivate::writePropertyElement(pugi::xml_node &node, const Property &property)
@@ -1015,6 +1214,19 @@ void XISFWriterPrivate::writeMetadata(pugi::xml_node &node)
writePropertyElement(metadata, Property("XISF:CreatorApplication", "LibXISF")); writePropertyElement(metadata, Property("XISF:CreatorApplication", "LibXISF"));
} }
void XISFWriterPrivate::updateImageAttachmentPos(pugi::xml_node &root, size_t offset)
{
pugi::xpath_node_set imageNodes = root.select_nodes("//Image");
int i = 0;
for(auto &image : _images)
{
pugi::xml_node node = imageNodes[i++].node();
std::string location = "attachment:" + std::to_string(offset) + ":" + std::to_string(image._dataBlock.data.size());
offset += image._dataBlock.data.size();
node.attribute("location").set_value(location.c_str());
}
}
XISFReader::XISFReader() XISFReader::XISFReader()
{ {
p = new XISFReaderPrivate; p = new XISFReaderPrivate;
@@ -1090,6 +1302,321 @@ void XISFWriter::writeImage(const Image &image)
p->writeImage(image); p->writeImage(image);
} }
class XISFModifyPrivate
{
public:
void open(const String &name);
void open(const ByteArray &data);
/** Open image from istream. This method takes ownership of *io pointer */
void open(std::istream *io);
/** Close opended file release all data. */
void close();
void save(const String &name);
void save(ByteArray &data);
void save(std::ostream &io);
void addFITSKeyword(uint32_t image, const FITSKeyword &keyword);
void updateFITSKeyword(uint32_t image, const FITSKeyword &keyword, bool add);
void removeFITSKeyword(uint32_t image, const String &name);
private:
void readXISFHeader();
void parseAttachmentPos(pugi::xml_node &root);
void updateAttachmentPos(pugi::xml_node &root, size_t offset);
std::unique_ptr<std::istream> _io;
std::unique_ptr<StreamBuffer> _buffer;
pugi::xml_document _doc;
pugi::xml_node _root;
std::map<int, std::pair<uint64_t, uint64_t>> _attachmentPos;// pair contain position and size
std::map<int, std::pair<uint64_t, uint64_t>> _attachmentPosNew;
};
void XISFModifyPrivate::open(const String &name)
{
close();
_io = std::make_unique<std::ifstream>(name.c_str(), std::ios_base::in | std::ios_base::binary);
readXISFHeader();
}
void XISFModifyPrivate::open(const ByteArray &data)
{
close();
_buffer = std::make_unique<StreamBuffer>(data);
_io = std::make_unique<std::istream>(_buffer.get());
readXISFHeader();
}
void XISFModifyPrivate::open(std::istream *io)
{
close();
_io.reset(io);
readXISFHeader();
}
void XISFModifyPrivate::close()
{
_io.reset();
_buffer.reset();
_root = pugi::xml_node();
_doc.reset();
}
void XISFModifyPrivate::save(const String &name)
{
std::ofstream fw(name.c_str(), std::ios_base::out | std::ios_base::binary);
if(fw.fail())
throw Error("Failed to open file");
save(fw);
}
void XISFModifyPrivate::save(ByteArray &data)
{
StreamBuffer buffer;
std::ostream oss(&buffer);
save(oss);
data = buffer.byteArray();
}
void XISFModifyPrivate::save(std::ostream &io)
{
if(!_io || !_root)
throw Error("No input file opened");
const char signature[16] = {'X', 'I', 'S', 'F', '0', '1', '0', '0', 0, 0, 0, 0, 0, 0, 0, 0};
pugi::xml_document doc;
doc.append_child(pugi::node_comment).set_value("\nExtensible Image Serialization Format - XISF version 1.0\nCreated with libXISF - https://nouspiro.space\n");
pugi::xml_node root_copy = doc.append_copy(_root);
uint32_t size = 0;
std::string header;
while(true)
{
std::stringstream xml;
xml.write(signature, sizeof(signature));
doc.save(xml, "", pugi::format_raw);
header = xml.str();
if(size != header.size())
{
size = header.size();
updateAttachmentPos(root_copy, size);
}
else
{
break;
}
}
uint32_t headerSize = header.size() - sizeof(signature);
header.replace(8, sizeof(uint32_t), (const char*)&headerSize, sizeof(uint32_t));
io.write(header.c_str(), header.size());
const uint64_t BLOCK_SIZE = 1024*1024*4;
std::vector<char> data(BLOCK_SIZE);
for(auto &pos : _attachmentPos)
{
uint64_t oldPos = pos.second.first;
uint64_t size = pos.second.second;
_io->seekg(oldPos);
while(size)
{
_io->read(&data[0], std::min(size, BLOCK_SIZE));
io.write(&data[0], std::min(size, BLOCK_SIZE));
size -= std::min(size, BLOCK_SIZE);
}
}
}
void XISFModifyPrivate::addFITSKeyword(uint32_t image, const FITSKeyword &keyword)
{
if(!_root)
throw Error("No input file opened");
pugi::xpath_node_set images = _root.select_nodes("//Image");
if(image >= images.size())
throw Error("Out of bounds");
pugi::xml_node imageNode = images[image].node();
XISFWriterPrivate::writeFITSKeyword(imageNode, keyword);
}
void XISFModifyPrivate::updateFITSKeyword(uint32_t image, const FITSKeyword &keyword, bool add)
{
if(!_root)
throw Error("No input file opened");
pugi::xpath_node_set images = _root.select_nodes("//Image");
if(image >= images.size())
throw Error("Out of bounds");
pugi::xpath_variable_set variables;
variables.set("name", keyword.name.c_str());
pugi::xml_node imageNode = images[image].node();
pugi::xml_node keywordNode = imageNode.select_node("FITSKeyword[@name=string($name)]", &variables).node();
if(keywordNode)
{
if(keywordNode.attribute("value"))
keywordNode.attribute("value").set_value(keyword.value.c_str());
else
keywordNode.append_attribute("value").set_value(keyword.value.c_str());
if(keywordNode.attribute("comment"))
keywordNode.attribute("comment").set_value(keyword.comment.c_str());
else
keywordNode.append_attribute("comment").set_value(keyword.comment.c_str());
}
else if(add)
{
XISFWriterPrivate::writeFITSKeyword(imageNode, keyword);
}
}
void XISFModifyPrivate::removeFITSKeyword(uint32_t image, const String &name)
{
if(!_root)
throw Error("No input file opened");
pugi::xpath_node_set images = _root.select_nodes("//Image");
if(image >= images.size())
throw Error("Out of bounds");
pugi::xpath_variable_set variables;
variables.set("name", name.c_str());
pugi::xml_node imageNode = images[image].node();
pugi::xml_node keywordNode = imageNode.select_node("FITSKeyword[@name=string($name)]", &variables).node();
if(keywordNode)
imageNode.remove_child(keywordNode);
}
void XISFModifyPrivate::readXISFHeader()
{
char signature[8];
_io->read(signature, sizeof(signature));
if(_io->fail())
throw Error("Failed to read from file");
if(memcmp(signature, "XISF0100", sizeof(signature)) != 0)
throw Error("Not valid XISF 1.0 file");
uint32_t headerLen[2] = {0};
_io->read((char*)&headerLen, sizeof(headerLen));
ByteArray xisfHeader(headerLen[0]);
_io->read(xisfHeader.data(), headerLen[0]);
_doc.load_buffer(xisfHeader.data(), xisfHeader.size());
_root = _doc.child("xisf");
parseAttachmentPos(_root);
if(!_root || _root.attribute("version").as_string() != std::string("1.0"))
throw Error("Unknown root XML element");
}
void XISFModifyPrivate::parseAttachmentPos(pugi::xml_node &root)
{
pugi::xpath_node_set locationAttributes = root.select_nodes("//@location");
int i = 0;
for(auto &attr : locationAttributes)
{
std::string locationStr = attr.attribute().as_string();
std::vector<std::string> location = splitString(locationStr, ':');
if(location.size() >= 3 && location[0] == "attachment")
{
uint64_t attachmentPos = std::stoull(location[1]);
uint64_t attachmentSize = std::stoull(location[2]);
_attachmentPos[i] = {attachmentPos, attachmentSize};
}
i++;
}
}
void XISFModifyPrivate::updateAttachmentPos(pugi::xml_node &root, size_t offset)
{
pugi::xpath_node_set locationAttributes = root.select_nodes("//@location");
for(auto &pos : _attachmentPos)
{
pugi::xml_attribute attr = locationAttributes[pos.first].attribute();
uint64_t attachmentSize = pos.second.second;
std::string locationStr = "attachment:" + std::to_string(offset) + ":" + std::to_string(attachmentSize);
_attachmentPosNew[pos.first] = pos.second;
offset += attachmentSize;
attr.set_value(locationStr.c_str());
}
}
XISFModify::XISFModify()
{
p = new XISFModifyPrivate();
}
XISFModify::~XISFModify()
{
delete p;
}
void XISFModify::open(const String &name)
{
p->open(name);
}
void XISFModify::open(const ByteArray &data)
{
p->open(data);
}
void XISFModify::open(std::istream *io)
{
p->open(io);
}
void XISFModify::close()
{
p->close();
}
void XISFModify::save(const String &name)
{
p->save(name);
}
void XISFModify::save(ByteArray &data)
{
p->save(data);
}
void XISFModify::save(std::ostream &io)
{
p->save(io);
}
void XISFModify::addFITSKeyword(uint32_t image, const FITSKeyword &keyword)
{
p->addFITSKeyword(image, keyword);
}
void XISFModify::updateFITSKeyword(uint32_t image, const FITSKeyword &keyword, bool add)
{
p->updateFITSKeyword(image, keyword, add);
}
void XISFModify::removeFITSKeyword(uint32_t image, const String &name)
{
p->removeFITSKeyword(image, name);
}
#define STRING_ENUM(map, map2, c, e) { map.insert({#e, c::e}); map2.insert({c::e, #e}); } #define STRING_ENUM(map, map2, c, e) { map.insert({#e, c::e}); map2.insert({c::e, #e}); }
struct Init struct Init
@@ -1134,6 +1661,10 @@ struct Init
compressionCodecOverride = DataBlock::LZ4HC; compressionCodecOverride = DataBlock::LZ4HC;
else if(compression.find("lz4") == 0) else if(compression.find("lz4") == 0)
compressionCodecOverride = DataBlock::LZ4; compressionCodecOverride = DataBlock::LZ4;
#ifdef HAVE_ZSTD
else if(compression.find("zstd") == 0)
compressionCodecOverride = DataBlock::ZSTD;
#endif
if(compression.find("+sh") != std::string::npos) if(compression.find("+sh") != std::string::npos)
byteShuffleOverride = true; byteShuffleOverride = true;
+49 -1
View File
@@ -35,6 +35,7 @@ namespace LibXISF
class XISFReaderPrivate; class XISFReaderPrivate;
class XISFWriterPrivate; class XISFWriterPrivate;
class XISFModifyPrivate;
class LIBXISF_EXPORT ByteArray class LIBXISF_EXPORT ByteArray
{ {
@@ -172,18 +173,22 @@ struct LIBXISF_EXPORT DataBlock
None, None,
Zlib, Zlib,
LZ4, LZ4,
LZ4HC LZ4HC,
ZSTD
}; };
bool embedded = false; bool embedded = false;
uint32_t byteShuffling = 0; uint32_t byteShuffling = 0;
uint64_t attachmentPos = 0; uint64_t attachmentPos = 0;
uint64_t attachmentSize = 0; uint64_t attachmentSize = 0;
uint64_t uncompressedSize = 0; uint64_t uncompressedSize = 0;
std::vector<std::pair<uint64_t, uint64_t>> subblocks;
CompressionCodec codec = None; CompressionCodec codec = None;
int compressLevel = -1; int compressLevel = -1;
ByteArray data; ByteArray data;
void decompress(const ByteArray &input, const std::string &encoding = ""); void decompress(const ByteArray &input, const std::string &encoding = "");
void compress(int sampleFormatSize); void compress(int sampleFormatSize);
/// ZSTD compression can be disabled at compile time
static bool CompressionCodecSupported(CompressionCodec codec);
}; };
struct LIBXISF_EXPORT Property struct LIBXISF_EXPORT Property
@@ -301,6 +306,8 @@ public:
* For example OBSERVER => Observer:Name, SITELAT => Observation:Location:Latitude * For example OBSERVER => Observer:Name, SITELAT => Observation:Location:Latitude
*/ */
bool addFITSKeywordAsProperty(const String &name, const String &value); bool addFITSKeywordAsProperty(const String &name, const String &value);
const ByteArray& iccProfile() const;
void setIccProfile(const ByteArray &iccProfile);
void* imageData(); void* imageData();
const void* imageData() const; const void* imageData() const;
@@ -310,6 +317,11 @@ public:
const T* imageData() const { return static_cast<T*>(imageData()); } const T* imageData() const { return static_cast<T*>(imageData()); }
size_t imageDataSize() const; size_t imageDataSize() const;
DataBlock::CompressionCodec compression() const; DataBlock::CompressionCodec compression() const;
/** Set compression type and level.
* @param compression define which compression algorithm to use.
* @param level number between 0 and 100. Zero means lowest compression and maximum speed. Hundred means maximum compression speed.
* -1 means default compression level defined by compression library.
*/
void setCompression(DataBlock::CompressionCodec compression, int level = -1); void setCompression(DataBlock::CompressionCodec compression, int level = -1);
bool byteShuffling() const; bool byteShuffling() const;
void setByteshuffling(bool enable); void setByteshuffling(bool enable);
@@ -399,6 +411,42 @@ public:
const char* what() const noexcept { return _msg.c_str(); } const char* what() const noexcept { return _msg.c_str(); }
}; };
class LIBXISF_EXPORT XISFModify
{
public:
XISFModify();
virtual ~XISFModify();
void open(const String &name);
void open(const ByteArray &data);
void open(std::istream *io);
void close();
void save(const String &name);
void save(ByteArray &data);
void save(std::ostream &io);
/**
* @brief addFITSKeyword append new keyword to image
* @param image index of image to update
* @param keyword that will be added
*/
void addFITSKeyword(uint32_t image, const FITSKeyword &keyword);
/**
* @brief updateFITSKeyword update keyword with same name
* @param image index of image to update
* @param keyword that will be updated
* @param add if true then it will add new keyword in case that it doesn't exists
*/
void updateFITSKeyword(uint32_t image, const FITSKeyword &keyword, bool add);
/**
* @brief removeFITSKeyword remove keyword with name from image
* @param image index of image to update
* @param name of keyword that will be removed
*/
void removeFITSKeyword(uint32_t image, const String &name);
private:
XISFModifyPrivate *p;
};
template<typename T> template<typename T>
constexpr Image::SampleFormat Image::sampleFormatEnum() constexpr Image::SampleFormat Image::sampleFormatEnum()
{ {
+1 -2
View File
@@ -7,7 +7,6 @@ Name: @PROJECT_NAME@
Description: @CMAKE_PROJECT_DESCRIPTION@ Description: @CMAKE_PROJECT_DESCRIPTION@
URL: @CMAKE_PROJECT_HOMEPAGE_URL@ URL: @CMAKE_PROJECT_HOMEPAGE_URL@
Version: @PROJECT_VERSION@ Version: @PROJECT_VERSION@
Requires.private: @PC_LIBS_REQUIRE@ Requires.private: @PC_REQUIRE_STR@
Cflags: -I"${includedir}" Cflags: -I"${includedir}"
Libs: -L"${libdir}" -lXISF Libs: -L"${libdir}" -lXISF
Libs.private: -L"${libdir}" @PC_LIBS_REQUIRE@
+162
View File
@@ -0,0 +1,162 @@
/************************************************************************
* LibXISF - library to load and save XISF files *
* Copyright (C) 2024 Dušan Poizl *
* *
* This program is free software: you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation, either version 3 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program. If not, see <http://www.gnu.org/licenses/>.*
************************************************************************/
#include "streambuffer.h"
namespace LibXISF
{
StreamBuffer::StreamBuffer()
{
setg(nullptr, nullptr, nullptr);
setp(nullptr, nullptr);
}
StreamBuffer::StreamBuffer(const ByteArray &byteArray) :
_size(byteArray.size()),
_byteArray(byteArray)
{
if(_byteArray.size())
{
char *ptr = _byteArray.data();
setg(ptr, ptr, ptr + _size);
setp(ptr, ptr + _size);
}
else
{
setg(nullptr, nullptr, nullptr);
setp(nullptr, nullptr);
}
}
ByteArray StreamBuffer::byteArray()
{
return _byteArray;
}
StreamBuffer::pos_type StreamBuffer::seekoff(off_type off, std::ios_base::seekdir dir, std::ios_base::openmode mode)
{
pos_type ret = pos_type(off_type(-1));
off_type newoffi = off;
off_type newoffo = off;
if(dir == std::ios_base::cur)
{
newoffi += gptr() - eback();
newoffo += pptr() - pbase();
}
else if(dir == std::ios_base::end)
newoffo = newoffi = _byteArray.size() - off;
char *ptr = _byteArray.data();
if(mode & std::ios_base::in && newoffi >= 0 && newoffi <= _size)
{
setg(ptr, ptr + newoffi, ptr + _size);
ret = pos_type(newoffi);
}
if(mode & std::ios_base::out && newoffo >= 0 && newoffo <= _size)
{
setp(ptr, ptr + _size);
pbump(newoffo);
ret = pos_type(newoffo);
}
return ret;
}
StreamBuffer::pos_type StreamBuffer::seekpos(pos_type pos, std::ios_base::openmode mode)
{
pos_type ret = pos_type(off_type(-1));
off_type off = pos;
if(off >= 0 && off <= (off_type)_byteArray.size())
{
char *ptr = _byteArray.data();
if(mode & std::ios_base::in)
setg(ptr, ptr + pos, ptr + _size);
if(mode & std::ios_base::out)
{
setp(ptr, ptr + _size);
pbump(pos);
}
ret = pos;
}
return ret;
}
std::streamsize StreamBuffer::xsgetn(char_type *s, std::streamsize n)
{
std::streamsize ret = 0;
std::streamsize len = egptr() - gptr();
if(len > 0)
{
std::streamsize c = n < len ? n : len;
std::memcpy(s, gptr(), c);
gbump(c);
ret = c;
}
return ret;
}
StreamBuffer::int_type StreamBuffer::underflow()
{
if(gptr() < egptr())
return traits_type::to_int_type(*gptr());
else
return traits_type::eof();
}
std::streamsize StreamBuffer::xsputn(const char_type *s, std::streamsize n)
{
off_type len = epptr() - pptr();
if(len < n)
{
_size += n - len;
_byteArray.resize(_size);
update_ptrs();
}
std::memcpy(pptr(), s, n);
pbump(n);
return n;
}
StreamBuffer::int_type StreamBuffer::overflow(int_type c)
{
if(traits_type::eq_int_type(traits_type::eof(), c))
return traits_type::eof();
_byteArray.append(c);
_size++;
pbump(1);
update_ptrs();
return c;
}
void StreamBuffer::update_ptrs()
{
off_type ipos = gptr() - eback();
off_type opos = pptr() - pbase();
char *ptr = _byteArray.data();
setg(ptr, ptr + ipos, ptr + _size);
setp(ptr, ptr + _size);
pbump(opos);
}
}
+51
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@@ -0,0 +1,51 @@
/************************************************************************
* LibXISF - library to load and save XISF files *
* Copyright (C) 2024 Dušan Poizl *
* *
* This program is free software: you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation, either version 3 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program. If not, see <http://www.gnu.org/licenses/>.*
************************************************************************/
#ifndef STREAMBUFFER_H
#define STREAMBUFFER_H
#include <streambuf>
#include "libxisf.h"
namespace LibXISF
{
class StreamBuffer : public std::streambuf
{
public:
StreamBuffer();
StreamBuffer(const ByteArray &byteArray);
ByteArray byteArray();
protected:
pos_type seekoff(off_type off, std::ios_base::seekdir dir, std::ios_base::openmode mode = std::ios_base::in | std::ios_base::out) override;
pos_type seekpos(pos_type pos, std::ios_base::openmode mode = std::ios_base::in | std::ios_base::out) override;
std::streamsize xsgetn(char_type *s, std::streamsize n) override;
int_type underflow() override;
std::streamsize xsputn(const char_type *s, std::streamsize n) override;
int_type overflow(int_type c = traits_type::eof()) override;
private:
void update_ptrs();
off_type _size = 0;
ByteArray _byteArray;
};
}
#endif // STREAMBUFFER_H
+22
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@@ -78,6 +78,17 @@ void benchmarkType(float avg, float stdDev)
std::cout << "LZ4HC compression \tElapsed time: " << timer.elapsed() << " " << "ms\tSpeed: " std::cout << "LZ4HC compression \tElapsed time: " << timer.elapsed() << " " << "ms\tSpeed: "
<< size/1024.0/1.024/timer.elapsed() << "MiB/s\tRatio: " << baseSize/xisfImage.size() << std::endl; << size/1024.0/1.024/timer.elapsed() << "MiB/s\tRatio: " << baseSize/xisfImage.size() << std::endl;
} }
if(DataBlock::CompressionCodecSupported(DataBlock::ZSTD))
{
image.setCompression(DataBlock::ZSTD);
timer.start();
XISFWriter writer;
writer.writeImage(image);
ByteArray xisfImage;
writer.save(xisfImage);
std::cout << "ZSTD compression \tElapsed time: " << timer.elapsed() << " " << "ms\tSpeed: "
<< size/1024.0/1.024/timer.elapsed() << "MiB/s\tRatio: " << baseSize/xisfImage.size() << std::endl;
}
image.setByteshuffling(true); image.setByteshuffling(true);
{ {
image.setCompression(DataBlock::Zlib); image.setCompression(DataBlock::Zlib);
@@ -109,6 +120,17 @@ void benchmarkType(float avg, float stdDev)
std::cout << "LZ4HC compression SH\tElapsed time: " << timer.elapsed() << " " << "ms\tSpeed: " std::cout << "LZ4HC compression SH\tElapsed time: " << timer.elapsed() << " " << "ms\tSpeed: "
<< size/1024.0/1.024/timer.elapsed() << "MiB/s\tRatio: " << baseSize/xisfImage.size() << std::endl; << size/1024.0/1.024/timer.elapsed() << "MiB/s\tRatio: " << baseSize/xisfImage.size() << std::endl;
} }
if(DataBlock::CompressionCodecSupported(DataBlock::ZSTD))
{
image.setCompression(DataBlock::ZSTD);
timer.start();
XISFWriter writer;
writer.writeImage(image);
ByteArray xisfImage;
writer.save(xisfImage);
std::cout << "ZSTD compression SH\tElapsed time: " << timer.elapsed() << " " << "ms\tSpeed: "
<< size/1024.0/1.024/timer.elapsed() << "MiB/s\tRatio: " << baseSize/xisfImage.size() << std::endl;
}
} }
void benchmark() void benchmark()
+1 -1
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@@ -52,7 +52,7 @@ void sha1(uint8_t *data, size_t len, uint8_t *hash)
nlen += 64 - nlen % 64; nlen += 64 - nlen % 64;
tmp.resize(nlen, 0); tmp.resize(nlen, 0);
size_t ml = len * 8; uint64_t ml = len * 8;
tmp[nlen - 1] = ml & 0xff; tmp[nlen - 1] = ml & 0xff;
tmp[nlen - 2] = ml >> 8 & 0xff; tmp[nlen - 2] = ml >> 8 & 0xff;
tmp[nlen - 3] = ml >> 16 & 0xff; tmp[nlen - 3] = ml >> 16 & 0xff;
+35 -3
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@@ -108,8 +108,8 @@ static std::map<Variant::Type, const char*> idToType = {
{Variant::Type::UI32Matrix, "UI32Matrix"}, {Variant::Type::UI32Matrix, "UI32Matrix"},
{Variant::Type::I64Matrix, "I64Matrix"}, {Variant::Type::I64Matrix, "I64Matrix"},
{Variant::Type::UI64Matrix, "UI64Matrix"}, {Variant::Type::UI64Matrix, "UI64Matrix"},
{Variant::Type::F32Matrix, "I8Matrix"}, {Variant::Type::F32Matrix, "F32Matrix"},
{Variant::Type::F64Matrix, "UI8Matrix"}, {Variant::Type::F64Matrix, "F64Matrix"},
}; };
template<typename T> template<typename T>
@@ -196,9 +196,12 @@ void deserializeVariant(const pugi::xml_node &node, Variant &variant, const Byte
std::string type = node.attribute("type").as_string(); std::string type = node.attribute("type").as_string();
Variant::Type typeId = typeToId[type]; Variant::Type typeId = typeToId[type];
if(typeId == Variant::Type::String && !node.attribute("location")) if(typeId == Variant::Type::String)
{ {
if(!node.attribute("location"))
variant.setValue(node.text().as_string()); variant.setValue(node.text().as_string());
else
variant.setValue(String(data.constData(), data.size()));
} }
else if(node.attribute("value")) else if(node.attribute("value"))
{ {
@@ -400,6 +403,7 @@ Variant variantFromString(Variant::Type type, const String &str)
Variant::Type Variant::type() const Variant::Type Variant::type() const
{ {
int idx = _value.index();
return (Variant::Type)_value.index(); return (Variant::Type)_value.index();
} }
@@ -430,6 +434,32 @@ String Variant::toString() const
return ss.str(); return ss.str();
}; };
auto matrixString = [](auto matrix) {
std::stringstream ss;
ss << "{";
for(int i=0; i<matrix.rows(); i++)
{
ss << "{";
for(int o=0; o<matrix.cols(); o++)
{
#if __GNUC__ >= 11 || __clang__
char str[128] = {0};
char *end = str + sizeof(str);
std::to_chars(str, end, matrix(i, o));
ss << str;
#else
ss << std::to_string(matrix(i, o));
#endif
if(o < matrix.cols() - 1)
ss << ",";
}
ss << "}";
if(i < matrix.rows() - 1)
ss << ",";
}
return ss.str();
};
switch(type()) switch(type())
{ {
case Variant::Type::Int8: toChars<Int8>(_value, str, end); break; case Variant::Type::Int8: toChars<Int8>(_value, str, end); break;
@@ -454,6 +484,8 @@ String Variant::toString() const
case Variant::Type::UI64Vector: string = vectorString(std::get<UI64Vector>(_value)); break; case Variant::Type::UI64Vector: string = vectorString(std::get<UI64Vector>(_value)); break;
case Variant::Type::F32Vector: string = vectorString(std::get<F32Vector>(_value)); break; case Variant::Type::F32Vector: string = vectorString(std::get<F32Vector>(_value)); break;
case Variant::Type::F64Vector: string = vectorString(std::get<F64Vector>(_value)); break; case Variant::Type::F64Vector: string = vectorString(std::get<F64Vector>(_value)); break;
case Variant::Type::F32Matrix: string = matrixString(std::get<F32Matrix>(_value)); break;
case Variant::Type::F64Matrix: string = matrixString(std::get<F64Matrix>(_value)); break;
case Variant::Type::String: string = std::get<String>(_value); break; case Variant::Type::String: string = std::get<String>(_value); break;
case Variant::Type::TimePoint: case Variant::Type::TimePoint:
{ {